PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1128s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24282.8 Da    PI: 9.0295
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1128s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.2e-201760245
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            ri  k   qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k
  SapurV1A.1128s0080.1.p 17 RICKKNHLQVTFSKRRAGLFKKASELSTLCGVDIAMIVFSPAQK 60
                            67778888********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.75E-25881IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.31868IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221760IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVSEKPAMGR RKIKIERICK KNHLQVTFSK RRAGLFKKAS ELSTLCGVDI AMIVFSPAQK  60
DLSFGHPDVD SITRRFLSGS PSPPSSGLPQ LIETRRNANA HDQNVELTRI LDHIEAEKKY  120
GQVLDRMRRA DRSRCCWESP IEELELHELE QLRGALEELK KAVAKQVNNI LIEPTSSLPF  180
LAVNGGGEGG DFGTKMEVDN ASSAALHINN FGYARKIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-16894187Myocyte-specific enhancer factor 2B
1tqe_Q5e-16894187Myocyte-specific enhancer factor 2B
1tqe_R5e-16894187Myocyte-specific enhancer factor 2B
1tqe_S5e-16894187Myocyte-specific enhancer factor 2B
6byy_A6e-16894187MEF2 CHIMERA
6byy_B6e-16894187MEF2 CHIMERA
6byy_C6e-16894187MEF2 CHIMERA
6byy_D6e-16894187MEF2 CHIMERA
6c9l_A5e-16894187Myocyte-specific enhancer factor 2B
6c9l_B5e-16894187Myocyte-specific enhancer factor 2B
6c9l_C5e-16894187Myocyte-specific enhancer factor 2B
6c9l_D5e-16894187Myocyte-specific enhancer factor 2B
6c9l_E5e-16894187Myocyte-specific enhancer factor 2B
6c9l_F5e-16894187Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1128s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031765.11e-115PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLB9HLM72e-99B9HLM7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04110.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-35AGAMOUS-like 62