PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1128s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 1702aa    MW: 186853 Da    PI: 6.1037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1128s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07795836346
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +WT +E e++ +  + +G++ + +Ia+ +  +++  +c+++++k
  SapurV1A.1128s0120.1.p 795 PWTSDEKEIFMHKLATFGKD-FQKIASFLD-HKSTADCVEFYYK 836
                             8*****************99.*********.***********98 PP
2Myb_DNA-binding30.21e-0910091048445
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                              WT eE  ++++av  +G++ ++ I++ +  +Rt+ qck ++ 
  SapurV1A.1128s0120.1.p 1009 WTDEEKSIFIQAVSSYGKD-FAMISHVVR-TRTRDQCKVFFS 1048
                              *****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-13779839IPR009057Homeodomain-like
PROSITE profilePS5129315.974791842IPR017884SANT domain
SMARTSM007174.1E-7792840IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-4795854IPR009057Homeodomain-like
PROSITE profilePS5129312.06710041055IPR017884SANT domain
SMARTSM007171.5E-810051053IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-1010061055IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-610081049IPR009057Homeodomain-like
PfamPF002497.5E-810091048IPR001005SANT/Myb domain
CDDcd001671.81E-710091047No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1702 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSETTSSSFG GGSTPRWKEL SYSSSNHYGS SRDFNRWGPH  60
DFRRPPGHGK QGSWHMLAEE SDHMYAPYRT SDKMLEDENC RPFLRGDGRY VRNNRGYFSQ  120
REWRGGHSWE MSNGSSNMPV RQHDVSNDHR SVDEMLMFPP SHPAHSDFAN TWDQHQLKDQ  180
HDNNKMGGVN GLGTGQRGDR ENSLDWKPLK WTRSGSLSSR GSGFSHSSSS KSLGVADSNE  240
GKAELQLKNA TPVLSLSGDA AACVTSTAPS EDISSRKKAR LGWGEGLAKY EKKKVEGPDT  300
SENKDEVVVS ASNVEPIQSQ TSNLSEKSHG VMGFSDCASP ATPSSVACSS SPGIEEKTLV  360
KSTDAYNAVS NSCGSPGVGS QCQMEGLSFN LEKMEVSLVA NLGSSLADLL QYYDPSSMDS  420
SFVRSTAMNK LLVWKGDISK SLELTESEIE SLENELKSMR FESGNRCPCP AASSFRPFES  480
DAKPCNVQGV ASNCVPPSPL LDASCGDDIV EKVSFCNGEL EEVHADVKDD FDSSVTATSK  540
LAESVSLTRA DSSTVTVKDD FYAIQSARMN LEGTVPCADE EENGIFTCKE DLPSVDVKSD  600
KSGEYNLCNL ILASNKESAS RASEVFNKLL PSEQCRFDFP GVTNGSSWQS DALVVEKIAR  660
RKQLLRFKER AVTLKFKAFH HLWKEDMLRK YRVKSQKKWE QSLRTTQSGF QKHRSSIRAR  720
FSSPAGNLSL DPATEILNFT SKLLSDSQVK LYRNALKMPA LILDKKEKIV SRFISGNGLV  780
EDPWAIEKEK AMINPWTSDE KEIFMHKLAT FGKDFQKIAS FLDHKSTADC VEFYYKNHKS  840
DCFEKIKKSK QTKSSTNYLV ASSTKWNREL NAASLDILGA ASLMAAGADH AVNSQRLCSS  900
RIFSSGYCNS KITEGHDGVL EDSSILDVLG SERETVAADV LAGICGSMSS EVMSSCTTTS  960
VNLVEGYRER KCQKVDSVAK PPLTFDVTQN YDEETCSDER YEEMDPADWT DEEKSIFIQA  1020
VSSYGKDFAM ISHVVRTRTR DQCKVFFSKA RKCLGLDLMH PGPRNFGTPV SNIGNEGGSD  1080
TEDACAIETG SAISSDKLDS KIDEDLLLSV VNTEHNESDA EERIRLHADL EGTEDNNASG  1140
ILNQNDPKIV DKMVSDPAFV ADTIVMNSVN QLESVQAQKV LIVSTNAESE RDQAAGKSVF  1200
VAEAGPVGGA VDASTSNAIT TAELKAVAEV SNDGMENGFP GQELLLPEKS LCIPSGLTQD  1260
STSNASHHAN MNSSSDTSRC SENTHQVSVQ LESVEKPPVI SLPQENDLSI TNSVVQDSAD  1320
IQHEKRLEIQ ECRDNKQGKA SVSRDDYFQH LSGHPLTSQN DRSQILRGYP LRIPTKKEMI  1380
GDIYGRPLSE ARIFPNSKKN VTGQFEAEDC YLQKCSGTKA QHSVSDPPFL SQCFEHASDH  1440
PRDHSQRSSD MEKPCRNGDV KLFGKILSNP SQKHDSIAHE KGEKEAPHLK PAGKSANFKS  1500
TGHHPTEGGS MAFLKRHNPH SLENFPTRSH GFWDGNRTQS GLPDSAALLA KYPAAFSKYP  1560
VPSSKMPQQT LQAVVKSKEC NLSGMSVLPS REVSGTNGVV DYQMYISHDS TGVQPFTVEK  1620
KQREDIFVEI PRLNGQQARG GMVGMNVVGR GGALAGGGCT GVSDPVVAIK RHYAKADQYG  1680
GQNGTVFREE ESWRGNGDIG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1128s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311103.20.0uncharacterized protein LOC7479891 isoform X1
TrEMBLB9HLN10.0B9HLN1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein