PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1141s0040.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 356aa    MW: 38437.5 Da    PI: 8.7865
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1141s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-121135327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                            +++C+++++tGtCk+G++CkF+H++
  SapurV1A.1141s0040.2.p 11 QPECQYYLKTGTCKFGATCKFHHPR 35
                            799********************96 PP
2zf-CCCH37.34.7e-125981527
                            --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                            +C +++rtG+Ck+G++CkF+H++
  SapurV1A.1141s0040.2.p 59 ECAYYLRTGQCKFGSTCKFHHPQ 81
                            7********************97 PP
3zf-CCCH38.32.3e-12217242227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++C+f+++tG Ck+G+ C+F+H++
  SapurV1A.1141s0040.2.p 217 GQPECQFYMKTGDCKFGAVCRFHHPR 242
                             5799********************96 PP
4zf-CCCH36.39.6e-12263288227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             +++ C f++r+G+Ck+G++CkF H++
  SapurV1A.1141s0040.2.p 263 GEPSCIFYSRYGICKFGPSCKFDHPM 288
                             7889********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-6835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159836IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-51435IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-55481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0655482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65882IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-105981IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-46080IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967215243IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9218242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6218245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5221243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479261289IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5261288IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5265288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKGEFPERIG QPECQYYLKT GTCKFGATCK FHHPRDKAGI SGRVSLNILG YPLQPNEIEC  60
AYYLRTGQCK FGSTCKFHHP QPTNMMVPLR GSPIYPTVSS PTTPGQQSYP GGLATTWSRA  120
SFITSPRWQA PSSYTPLILP QGVVSVPGWN AYSGQLGSVS SPESQQQTGN SQIYGNLRQS  180
ESVNAGSQGA FSPYRSGSAP LGLYALQRES VFPERLGQPE CQFYMKTGDC KFGAVCRFHH  240
PRERLIPAPD CVLSPLGLPL RPGEPSCIFY SRYGICKFGP SCKFDHPMGI FTYNLTASSS  300
ADAPVRRLLG SSSGSAGLTL SSEGLVEAGA TKPRRLSLSE PRQMPPGDDN IDTGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1141s0040.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164701e-137AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014133.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_011015459.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1Y3460.0A0A2K1Y346_POPTR; Uncharacterized protein
STRINGcassava4.1_007759m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1