PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1177s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 354aa    MW: 41606.6 Da    PI: 4.283
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1177s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix347.6e-11119200186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +W+++e  +L+e+  ++  +l+r++l+  +W +v++k+ +  ++er+  qC++ ++ l++rykk+k+   +      s+++yf++++
  SapurV1A.1177s0050.1.p 119 EWSEHEKFVLLEVWGDKFLQLGRNSLRSEDWIDVAEKVsETSKIERNEAQCRQMMDVLKRRYKKEKAKGVN-----FSKWAYFNKMD 200
                             5*************************************555678**********************99997.....468*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.7E-18118202No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDYMEDDPRY PPKSYSLNRS KKHPLYPQRQ TPTLHYNYDY DYDYLDVDED GDELDEEFLD  60
KNDSSYNPGG GYSRKFQRNE EGFERYPKRQ RLKNPVSNYE FAPRNPRLLE YEDGNSAVEW  120
SEHEKFVLLE VWGDKFLQLG RNSLRSEDWI DVAEKVSETS KIERNEAQCR QMMDVLKRRY  180
KKEKAKGVNF SKWAYFNKMD MLMKQESGTV GAFSLACGVD SGEYVFMDTR VYLDRANMND  240
EMRDSPCESE DEEEEEEEEE EGGSAGNDGM KGLRVLAESV QKFGEIYGKI ESSKREQMME  300
LERMRIEFQR DLELQKKQIL ERAQEEIAKI RDEDEEEEDS SDDDDDSGGN ISK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1177s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2883700.0GU288370.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
GenBankGU2883710.0GU288371.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence.
GenBankGU2883720.0GU288372.1 Populus balsamifera isolate RNA13 haplotype A unknown protein gene, partial sequence.
GenBankGU2883730.0GU288373.1 Populus balsamifera isolate RNA13 haplotype B unknown protein gene, partial sequence.
GenBankGU2883740.0GU288374.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
GenBankGU2883750.0GU288375.1 Populus balsamifera isolate WHR03 haplotype B unknown protein gene, partial sequence.
GenBankGU2883760.0GU288376.1 Populus balsamifera isolate FBK13 haplotype A unknown protein gene, partial sequence.
GenBankGU2883780.0GU288378.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence.
GenBankGU2883800.0GU288380.1 Populus balsamifera isolate GIL14 haplotype A unknown protein gene, partial sequence.
GenBankGU2883820.0GU288382.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence.
GenBankGU2883840.0GU288384.1 Populus balsamifera isolate KUU07 haplotype A unknown protein gene, partial sequence.
GenBankGU2883860.0GU288386.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence.
GenBankGU2883880.0GU288388.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043444.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A2I4KKG20.0A0A2I4KKG2_POPTR; Trihelix family protein
TrEMBLA0A2K1WXE60.0A0A2K1WXE6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s06120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-86Trihelix family protein