PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1183s0080.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 261aa MW: 28133.1 Da PI: 5.9275

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1183s0080.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00066	194	232	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq SapurV1A.1183s0080.4.p 194 RKEKLGDRITVLHQMVSPF-----GKTDTASVLLEAIGYIRFLQ 232 5566777888888888877.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.661	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-10	192	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-6	192	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.95E-5	192	236	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MMAGNPSWWS MHPPSQQTSA LLSSSPSIFP SQYVFGSSSF SSNSLPDNQE LPQSWNQLLL 60 GGSSGDEDRY GMSQFQPKKL GSWEDQILSP SPCISVVADV KQEVSHNNSL YGHGDEDFQS 120 ARPAAWPQVM PVSSPRSCVT SLGSTNILDF SYNKADGTNQ PPDQSSESNS SATGGACKKA 180 RVQPSSSSQP LKVRKEKLGD RITVLHQMVS PFGKTDTASV LLEAIGYIRF LQGQIEALSS 240 PYLATASPNL RNHHQPGQEE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1183s0080.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455225.1	1e-166	transcription factor bHLH68 isoform X3
Swissprot	Q8S3D1	2e-38	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2K2BZV4	1e-164	A0A2K2BZV4_POPTR; Uncharacterized protein
STRING	POPTR_0001s18660.1	1e-162	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1183s0080.4.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]