PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1186s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Nin-like

Protein Properties

Length: 987aa MW: 108611 Da PI: 5.6028

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1186s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ SapurV1A.1186s0030.1.p 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.31E-21	880	967	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.7E-25	883	963	No hit	No description
SMART	SM00666	1.8E-19	884	966	IPR000270	PB1 domain
PROSITE profile	PS51745	21.226	884	967	IPR000270	PB1 domain
Pfam	PF00564	2.9E-17	885	963	IPR000270	PB1 domain
CDD	cd06407	7.86E-31	885	963	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MENPFSSKEK GTGYWASPRA QMDGVTPLDG APRNLLLEDP FNNFSELMNF DMYAEWCSSP 60 SAMDQMLDPF GMPIFPSTSY PSFDPGSFAA QNSALVQNTT NAAGTCYNGG DKVVLQQTNS 120 HFCYPTDSID TDDLGARHTN DAGQQNHFSN LTNPIISRPL GPSLDERMLR ALSLLKVSSG 180 GGFLAQVWVP IRNGNQYMLS TTEQPYLLDE MLAGFREVSR TFTFPAEVKP GFPLGLPGRV 240 FISKVPEWTS NVIYYSKGEY LRAKQAADHK VQGSFALPIF DPDEMSCCAV LELVTVKEKT 300 DFDSEMENVC NALEAVNLRS TAAPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT 360 WIPCNYTEET LDEITKVRVR EANSRSSGKC VLCIESTACY ANGKEMQAFV HACAEHYIEE 420 GQGIAGKALQ SNCPFFFPDF KAYDITEYPF VHHARKYGLN AAVAIRLRST HTGDEDYILE 480 FFLPVNIKGS SDQQLLLNNL SGTMQRICKS LRTVSETESV RQEYSEDGLP REAVPSIRSM 540 SISKGSSQTA LSEGNLNSTS KMPFNKPDSK NDQTESNSSN EQKMNGSRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL 660 DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSEPA SHDVVSVRQA 720 PCTDGSNSTV KVENDECHIG SRGVLKESCV YAIDYSEDSK SAAMDAGLCE QANFGSGPWA 780 RHENNVTGSL AKAGNKWGMK NSGIILENLD SRFVSQSSIF AKEMDTKMEG DDGNVEHNQP 840 TCSSMTDSSN GSGSMMHGSI SSSSSFEERK HSKVQTSFGD ADFKITVKAS YKEDIIRFKF 900 DPSAGCFQLY KEVSKRFKLQ TGTFQLKYLD DEEEWVLLVS DSDLQECLEI MEDVGTRNVK 960 FLVCDAAAPF AMGSFGSSNS FLVGNS*

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MENPFSSKEK GTGYWASPRA QMDGVTPLDG APRNLLLEDP FNNFSELMNF DMYAEWCSSP  60
SAMDQMLDPF GMPIFPSTSY PSFDPGSFAA QNSALVQNTT NAAGTCYNGG DKVVLQQTNS  120
HFCYPTDSID TDDLGARHTN DAGQQNHFSN LTNPIISRPL GPSLDERMLR ALSLLKVSSG  180
GGFLAQVWVP IRNGNQYMLS TTEQPYLLDE MLAGFREVSR TFTFPAEVKP GFPLGLPGRV  240
FISKVPEWTS NVIYYSKGEY LRAKQAADHK VQGSFALPIF DPDEMSCCAV LELVTVKEKT  300
DFDSEMENVC NALEAVNLRS TAAPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT  360
WIPCNYTEET LDEITKVRVR EANSRSSGKC VLCIESTACY ANGKEMQAFV HACAEHYIEE  420
GQGIAGKALQ SNCPFFFPDF KAYDITEYPF VHHARKYGLN AAVAIRLRST HTGDEDYILE  480
FFLPVNIKGS SDQQLLLNNL SGTMQRICKS LRTVSETESV RQEYSEDGLP REAVPSIRSM  540
SISKGSSQTA LSEGNLNSTS KMPFNKPDSK NDQTESNSSN EQKMNGSRRQ VEKKRSTAEK  600
TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL  660
DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSEPA SHDVVSVRQA  720
PCTDGSNSTV KVENDECHIG SRGVLKESCV YAIDYSEDSK SAAMDAGLCE QANFGSGPWA  780
RHENNVTGSL AKAGNKWGMK NSGIILENLD SRFVSQSSIF AKEMDTKMEG DDGNVEHNQP  840
TCSSMTDSSN GSGSMMHGSI SSSSSFEERK HSKVQTSFGD ADFKITVKAS YKEDIIRFKF  900
DPSAGCFQLY KEVSKRFKLQ TGTFQLKYLD DEEEWVLLVS DSDLQECLEI MEDVGTRNVK  960
FLVCDAAAPF AMGSFGSSNS FLVGNS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1186s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372780.2	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2K1R7I5	0.0	A0A2K1R7I5_POPTR; Uncharacterized protein
STRING	POPTR_0017s04980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1186s0030.1.p

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]