PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1188s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 338aa    MW: 37894.2 Da    PI: 7.5444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1188s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd +l ++++++G+g +W + +++ g++R++k+c++rw++yl
  SapurV1A.1188s0040.1.p 14 KGPWSPEEDSKLREYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                            79*********************************************97 PP
2Myb_DNA-binding37.26.6e-1269111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g ++ eEd  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.1188s0040.1.p  69 GEFSDEEDRVICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                             789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.986962IPR017930Myb domain
SuperFamilySSF466891.6E-2711109IPR009057Homeodomain-like
SMARTSM007175.8E-131364IPR001005SANT/Myb domain
PfamPF002497.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241569IPR009057Homeodomain-like
CDDcd001677.41E-101662No hitNo description
PROSITE profilePS5129422.08463117IPR017930Myb domain
SMARTSM007173.1E-1167115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLREYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
APQSHRNPPP FHSPHHTPPL PSHSPPSMYK DSGGSFSYYP QNRSFTGFEP SSQNPSSLLS  180
NNSFSVATNS LLFQTNQEGL FSPMQYYHPV KDNYLVFGSE SSCSSNSDGS CSLIGHGREI  240
KQEYMGFHGF MSSNGYGDQN QKVMLGNGDN GVEIMNQWVE KANGSIGETP SDYDFIENVK  300
QLVSSNANRN DVSNSYNIDT LLIDENKTQE TVMYHYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1188s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827140.0AC182714.2 Populus trichocarpa clone Pop1-86K15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454998.10.0transcription factor RAX2
TrEMBLA0A3N7EWJ80.0A0A3N7EWJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-78myb domain protein 36