PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1196s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 367aa    MW: 41398.5 Da    PI: 8.0576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1196s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98.1e-5381441128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+ +yLkkk++++++++ +vi++vdiyk++PwdLp+++  +ekewyfFs+rd+ky++g r+nra++sgyWkatg
  SapurV1A.1196s0040.1.p   8 LPPGFRFHPTDEELILHYLKKKLASTPFPV-SVIADVDIYKFDPWDLPAQAVLGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATG 93 
                             79****************************.99***************8777899******************************** PP

                     NAM  88 kdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk ++++          ++e++g+kk Lvfy+g+ pkg+ktdW+mheyrl
  SapurV1A.1196s0040.1.p  94 TDKIIMAStmapkgvvigGQENIGVKKALVFYRGKPPKGVKTDWIMHEYRL 144
                             ******9989998888877778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-635176IPR003441NAC domain
PROSITE profilePS5100560.9358176IPR003441NAC domain
PfamPF023652.8E-279144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MKNPQSSLPP GFRFHPTDEE LILHYLKKKL ASTPFPVSVI ADVDIYKFDP WDLPAQAVLG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKIIMA STMAPKGVVI GGQENIGVKK  120
ALVFYRGKPP KGVKTDWIMH EYRLAETPTY TNNRSTKPKD SSMRLDDWVL CRIYKKSLAL  180
TSSPRALISS EHGQEEEEEE QRFVEETLLP ISSKNTLMPQ KSCSFSNLFD ATDYSMLRSF  240
LADTQFNPAG FESNPSLNGS TAQLDQTFFG NSDSASNSNS TSSDYFLQKL PQLNNSTPNY  300
MHENKLKRQL SHLDEEMPLP SKKYANSCSF TNTSNNNQTD MGQYSFLSQQ FLNQQLLLSP  360
HLQFTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-71517614165NO APICAL MERISTEM PROTEIN
1ut4_B3e-71517614165NO APICAL MERISTEM PROTEIN
1ut7_A3e-71517614165NO APICAL MERISTEM PROTEIN
1ut7_B3e-71517614165NO APICAL MERISTEM PROTEIN
3swm_A3e-71517617168NAC domain-containing protein 19
3swm_B3e-71517617168NAC domain-containing protein 19
3swm_C3e-71517617168NAC domain-containing protein 19
3swm_D3e-71517617168NAC domain-containing protein 19
3swp_A3e-71517617168NAC domain-containing protein 19
3swp_B3e-71517617168NAC domain-containing protein 19
3swp_C3e-71517617168NAC domain-containing protein 19
3swp_D3e-71517617168NAC domain-containing protein 19
4dul_A3e-71517614165NAC domain-containing protein 19
4dul_B3e-71517614165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1196s0040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167711e-117AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319143.30.0NAC transcription factor 47
SwissprotQ84TD61e-116NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A2K1Y1C60.0A0A2K1Y1C6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-104NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]