PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1204s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 374aa    MW: 41435 Da    PI: 5.1198
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1204s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.5e-0959104342
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                              r+C+e+e+ ++ l C+ +   lC  C   +H+       H++vp+
  SapurV1A.1204s0050.1.p  59 VRVCEECERAPAALLCKADAASLCTACDADIHSAnplarrHQRVPV 104
                             689*****************************66899999*99986 PP
2CCT70.44.6e-24304347144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  SapurV1A.1204s0050.1.p 304 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 347
                             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-61461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5661461IPR000315B-box-type zinc finger
CDDcd000218.71E-71761No hitNo description
PROSITE profilePS5011911.67557104IPR000315B-box-type zinc finger
PfamPF006432.2E-759104IPR000315B-box-type zinc finger
CDDcd000215.45E-960104No hitNo description
SMARTSM003367.8E-1062104IPR000315B-box-type zinc finger
PfamPF062037.2E-18304346IPR010402CCT domain
PROSITE profilePS5101716.648304346IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLKQESGGGG GGDSWARVCD TCRAAACAVY CRADSAYLCA GCDARVHAAS HLASRHERVR  60
VCEECERAPA ALLCKADAAS LCTACDADIH SANPLARRHQ RVPVLPFSGC LPGPRVGPAA  120
GETEDRFMTQ EGEEAPSEEE EEEEEEEAAS WLLLNPLKNS TNQNNNGFLF GGEVDEYLDL  180
VEYNSCAENQ YPDQYNQQHY SVPPKSYGGD RVVPFQYGEG KDHQNRQQYH NFQLGLEFEP  240
SKAADSYNGS VSQSVSMSSM DVGVVPESAM SEISISHQRT PKGTFELFSS TAIQMPSQLR  300
QMDREARVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK GRFAKRTDVE VEVDEMFSTT  360
LTAETGYGIV PSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1204s0050.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5151510.0AY515151.1 Populus deltoides CONSTANS-like protein CO2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447845.10.0zinc finger protein CONSTANS-LIKE 2
RefseqXP_024454227.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-140COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLR4UBH10.0R4UBH1_POPTO; COL1-1
STRINGPOPTR_0004s10800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-82CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]