PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1239s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 254aa    MW: 27179 Da    PI: 7.6638
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1239s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.74.3e-3155110258
             ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                             +++rY+eC+kNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e++
  SapurV1A.1239s0080.1.p  55 SSIRYRECKKNHAVGIGGHALDGCGEFLAA-GDEGTLDALKCAACNCHRNFHRKESD 110
                             5789*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-2857109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2258110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-2858108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.82159108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.38E-21176251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-33177252IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-26190246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEFDEHEDQE EEMTGMPPGY DSISNSAAAR SKMGPAGGGG EGASTTTANT NTRKSSIRYR  60
ECKKNHAVGI GGHALDGCGE FLAAGDEGTL DALKCAACNC HRNFHRKESD GGGEVILYHG  120
HHHQQQPQFS PYYRAPPPTG YLHHLTPTPQ SRPLALPAAS GGGGYSREEE DVSNPSSSGG  180
GGGGGGGSSK KRFRTKFTQE QKEKMLAFAE SLGWRIQKHD EAGVEQFCAE TGVKRNVLKV  240
WMHNNKHTLG KKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-291892481675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177187SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1239s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010389.11e-138PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2599e-77ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH59e-77ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLB9GV221e-133B9GV22_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10330.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-70homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]