PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1251s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 120aa    MW: 13855.1 Da    PI: 10.6397
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1251s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.5e-11793487
                            E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3  4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                            +l+  dv    r+++p k ++e+     +gk     +l ++d+sg  +s+ + ++ ++k  + v+++GW++Fv a+gLk g  +vF ++
  SapurV1A.1251s0040.1.p  7 TLSETDVE--VRFSVPSKWFRENlysrfEGK--FFLDLPVKDRSGevQSFCFSVRTKGKHLKPVISRGWRKFVLAKGLKPGNKIVFVRE 91
                            55334443..4689*********99987555..56689*******88888888866666666************************977 PP

                            SS CS
                      B3 86 gr 87
                            ++
  SapurV1A.1251s0040.1.p 92 ND 93
                            65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-12594IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-10593IPR015300DNA-binding pseudobarrel domain
CDDcd100177.00E-126106No hitNo description
PfamPF023621.6E-81593IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSNLRKTLSE TDVEVRFSVP SKWFRENLYS RFEGKFFLDL PVKDRSGEVQ SFCFSVRTKG  60
KHLKPVISRG WRKFVLAKGL KPGNKIVFVR ENDPEIGTEY TVEVVKEIKL FGRDIQGRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1251s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139261e-128AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141001e-128AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002456.13e-67PREDICTED: uncharacterized protein LOC105109432
TrEMBLB9GZ505e-67B9GZ50_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00470.18e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2850123