PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1260s0050.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HD-ZIP

Protein Properties

Length: 244aa MW: 27663.9 Da PI: 6.1548

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1260s0050.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.5e-18	30	82	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k SapurV1A.1260s0050.2.p 30 KKRLNLEQVKALEKSFEVGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWK 82 4568889*********************************************9 PP
2	HD-ZIP_I/II	129.3	1.5e-41	28	119	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 ekk+rl+ eqvk+LE+sFe +kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdye Lk+++d+lk++n++L++++++L SapurV1A.1260s0050.2.p 28 EKKKRLNLEQVKALEKSFEVGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKKQFDSLKADNDALQAQNKKL 114 69************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 ++el SapurV1A.1260s0050.2.p 115 HAELL 119 *9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.65E-19	21	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.892	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	27	88	IPR001356	Homeobox domain
CDD	cd00086	2.48E-15	29	85	No hit	No description
Pfam	PF00046	2.8E-15	30	82	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.0E-19	32	91	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	64	80	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.4E-15	84	122	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSFSGMEKCE EVGNGEDDLS DDGSQIGEKK KRLNLEQVKA LEKSFEVGNK LEPERKLQLA 60 KALGLQPRQI AIWFQNRRAR WKTKQLEKDY EILKKQFDSL KADNDALQAQ NKKLHAELLS 120 LKIRESNEVN LKKETEGSWS NGSENSCDVN IDISRNPVAS SPVSSHLTTK HLFSTSIRPA 180 SITQLLQGSS RSDLQCLKVD QLVHQDENFC SMFNGMEEQQ GFWSWPEQQN ATFSLNQVQF 240 SNN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	84	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1260s0050.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444562.1	1e-169	homeobox-leucine zipper protein ATHB-13 isoform X2
Swissprot	Q8LC03	9e-76	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A3N7G4G7	1e-168	A0A3N7G4G7_POPTR; Uncharacterized protein
STRING	POPTR_0017s11800.1	1e-167	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	4e-78	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1260s0050.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]