PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1262s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 487aa    MW: 56522.8 Da    PI: 10.0047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1262s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06452471525
                             --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                             +Cr+fa+ G C yG +CkF+H
  SapurV1A.1262s0070.1.p 452 PCRYFAQ-GRCYYGHNCKFMH 471
                             8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.9E-886133IPR003034SAP domain
SuperFamilySSF689067.55E-787133No hitNo description
PfamPF020374.1E-799132IPR003034SAP domain
PROSITE profilePS5010314.371447474IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-7449474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6450472IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4451471IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MATYKQRNPQ DEQEEEGYST ESGGSDMDYD SDNDPSWSVF EETRSNLSRL SVKKKSKPSV  60
AKDFGLGFDK DREEKETKLT KVDEKSYEEV EKIIQAGNLE KLKVEQCKVY LRKNKLRLTG  120
KKDILVQRIK EHQEILSGGG EKKYPISSFV LDCKGDACKG DIVMFVQNVY EKYNIASRSA  180
IGPPIGTRMV AGQIVHESYG AAKQQHTFTI EVLWSKGENP LPPLHPLLVK GRNVYRMKTL  240
RQRWEDEGER RRILLEKHSR GSLARSNRET RIQEKEKRKM LRVERALKKE ETNKSHSQLN  300
PRTSLNDGLS KMDQRQPLKC VDRYRPMRSP RRQGCEQPKL HASRGENDYR GQVPVNSVEY  360
SLNDGLSKMD QRQPLRCVDR YRPMRSPRRQ GYEQPKLHAS RGENDYRGQV PVNSVGYSIG  420
QAPNFWREPL RSIHNSSPIR SPHGQGYQQI QPCRYFAQGR CYYGHNCKFM HELRDEREQR  480
REGWGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1262s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826921e-89AC182692.2 Populus trichocarpa clone Pop1-44B2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452914.10.0zinc finger CCCH domain-containing protein 62 isoform X2
TrEMBLA0A2I4KKJ10.0A0A2I4KKJ1_POPTR; C3H family protein
TrEMBLA0A2K2B2U90.0A0A2K2B2U9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224