PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1274s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 354aa    MW: 38813.9 Da    PI: 9.8402
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1274s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-13153197347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  SapurV1A.1274s0030.1.p 153 PWTEEEHRAFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 197
                             8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-17146201IPR009057Homeodomain-like
PROSITE profilePS5129418.751146202IPR017930Myb domain
TIGRFAMsTIGR015576.6E-18149201IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.3E-11150196IPR009057Homeodomain-like
SMARTSM007176.4E-10150200IPR001005SANT/Myb domain
CDDcd001678.88E-9153198No hitNo description
PfamPF002491.4E-10153197IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSIQSFSLGV HTSLPHHHIY HQTIAYIFTL SLCPSLLFVG AGWLSRKLSF VWVKMGRKCS  60
HCSNTGHNSR TCTTYRAAVA GGPRLFGVQL DISSSSSAMK KSFSVDCLPS SSSQSSSLCS  120
SRVSIDDNSD KTSVDYLSDV LLGPVQTRKK GVPWTEEEHR AFLIGLEKLG KGDWRGISRN  180
FVTTRTPTQV ASHAQKYFLR QAVLNKKRRR SSLFDMGGSS SSICSINTTS RHQVDGSRKT  240
RESDYPVPTC FKTSGSQHAT IHRRDTSTLP LLGISNSDHE QGVKSDYSDE LAPLNHSMPF  300
LLNDPFPKPS NSSKEMPPNV TVPDLELSLG ASKSLENDNP SPSPLLIRPI RVT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1274s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2253740.0CU225374.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308294.31e-164transcription factor MYBS3
TrEMBLA0A2K2A2R51e-168A0A2K2A2R5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15480.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-51MYB_related family protein