PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1276s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 311aa    MW: 34994 Da    PI: 6.9439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1276s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-172774148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+eEde+l++++++ G g+W+t +++ g+ R++k+c++rw +yl
  SapurV1A.1276s0060.1.p 27 RGPWTPEEDEILANYIHKDGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 74
                            89******************************99************97 PP
2Myb_DNA-binding48.32.2e-1580125148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.1276s0060.1.p  80 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125
                             678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-221876IPR009057Homeodomain-like
PROSITE profilePS5129416.3492274IPR017930Myb domain
SuperFamilySSF466899.54E-2924121IPR009057Homeodomain-like
SMARTSM007171.6E-122676IPR001005SANT/Myb domain
PfamPF002491.4E-152774IPR001005SANT/Myb domain
CDDcd001676.35E-112974No hitNo description
PROSITE profilePS5129424.57875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2477130IPR009057Homeodomain-like
SMARTSM007173.4E-1479127IPR001005SANT/Myb domain
PfamPF002497.0E-1481125IPR001005SANT/Myb domain
CDDcd001671.32E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRNPSSSSSA RSRSTPTPCC GKVGIKRGPW TPEEDEILAN YIHKDGEGRW RTLPKRAGLL  60
RCGKSCRLRW MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTHLSKKLI RQGIDPKTHK PLYPNPNSSQ ISNIPPIQNS NPSSFPLEEN ARFDRAIATR  180
VIDNFPLTNL DQFPNQVIND DGAENRPSGD GFNKGSVLQS RHEQNEEEDY TGYENEDTFS  240
LFLDSLINEN VFMYQEQQQL QQPNIPVPSG EPVISSSQAI HHGSSCEAEV SYSMAAFGEK  300
DGVLNSHDLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24271297108B-MYB
1h8a_C1e-232512925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1276s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319686.10.0transcription repressor MYB5
SwissprotQ388501e-82MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9I5W50.0B9I5W5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-84myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]