PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1277s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 271aa MW: 30459.2 Da PI: 10.4524

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1277s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	63	85	24	47
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Ia++++ gRt++++k++w+++ SapurV1A.1277s0010.1.p 63 WSLIAARLP-GRTDNEIKNYWNTH 85 *******.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-5	17	41	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.84E-10	18	87	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.47	32	86	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.5E-12	63	103	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-6	63	85	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-6	63	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MNNFTISIIP QVAGGLLRCS KSSRLRWINY LRPDLKRGNF TFRAISLSTG TRSQLDMTSL 60 IWWSLIAARL PGRTDNEIKN YWNTHIKRKL FSRGIDPQTH RPLNSTTTSS TTTNSTNNKN 120 SNMGTKRITN FKLEEQNYSF VQVQPELITM SNIIKVGGSS DSAEDSNSSS GVTTELEVYP 180 KHKLNLELSI GLPCQSQTSS INDLNDSKQA NQRHQEQVVT HQSLPTSATP FSSAPAVVHR 240 TACLYRFYNR GFKKSVTADS QYRFYRPLDA *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1277s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001250.1	1e-127	PREDICTED: transcription repressor MYB6-like
Refseq	XP_011015999.1	1e-127	PREDICTED: transcription repressor MYB6-like
Swissprot	P81393	1e-39	MYB08_ANTMA; Myb-related protein 308
TrEMBL	B9IP37	1e-122	B9IP37_POPTR; Uncharacterized protein
STRING	POPTR_0019s00750.1	1e-123	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	2e-38	myb domain protein 7

Link Out ? help Back to Top
Phytozome	SapurV1A.1277s0010.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]