PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1285s0100.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 332aa    MW: 36759.7 Da    PI: 8.856
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1285s0100.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.96.4e-56101371128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+++yL++k+++ ++++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tg
  SapurV1A.1285s0100.5.p  10 LPPGFRFHPTDEELITHYLQNKISDADFSC-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTG 95 
                             79****************************.89***************99999********************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             kdke++++ + +l+g+kktLvfy+grap+gekt+Wvmheyr+
  SapurV1A.1285s0100.5.p  96 KDKEIFNSvTLQLIGMKKTLVFYRGRAPRGEKTNWVMHEYRV 137
                             ******9878889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-648158IPR003441NAC domain
PROSITE profilePS5100560.19710158IPR003441NAC domain
PfamPF023652.8E-2911137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEGDAKEETL PPGFRFHPTD EELITHYLQN KISDADFSCR AIGDVDLNKC EPWDLPGKAK  60
MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSVTLQLIG MKKTLVFYRG  120
RAPRGEKTNW VMHEYRVHAK AAFRASKDEW VVCRIFQKSA GPKKYPPNQS RTGNPFYNLE  180
IGPSVMPPQM MQAAADNFQL PIGRNYMMSN AELQAELTRV FRAGGSAGIN LPMQSPLNNS  240
YSVGGGAGGG CFTVSGLNLN LGGATSQPVM RPMPPPAMNQ QDATPSMMAS AGSFAVEQAG  300
YGAEMNGANG HSNRFMGMQQ CMDLENYWPP Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56916416171NO APICAL MERISTEM PROTEIN
1ut4_B2e-56916416171NO APICAL MERISTEM PROTEIN
1ut7_A2e-56916416171NO APICAL MERISTEM PROTEIN
1ut7_B2e-56916416171NO APICAL MERISTEM PROTEIN
3swm_A3e-56916419174NAC domain-containing protein 19
3swm_B3e-56916419174NAC domain-containing protein 19
3swm_C3e-56916419174NAC domain-containing protein 19
3swm_D3e-56916419174NAC domain-containing protein 19
3swp_A3e-56916419174NAC domain-containing protein 19
3swp_B3e-56916419174NAC domain-containing protein 19
3swp_C3e-56916419174NAC domain-containing protein 19
3swp_D3e-56916419174NAC domain-containing protein 19
4dul_A2e-56916416171NAC domain-containing protein 19
4dul_B2e-56916416171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1285s0100.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445785.10.0NAC domain-containing protein 92 isoform X3
TrEMBLA0A2K1WTU10.0A0A2K1WTU1_POPTR; Uncharacterized protein
TrEMBLA0A3N7G5K30.0A0A3N7G5K3_POPTR; Uncharacterized protein
TrEMBLA0A3N7I2K10.0A0A3N7I2K1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-115NAC domain containing protein 38