PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1301s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 167aa    MW: 19174.5 Da    PI: 9.7021
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1301s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.1e-081161492154
                             HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             k +yp++e++++L +++gL+ +q+ +WF N+R +
  SapurV1A.1301s0010.1.p 116 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 149
                             569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.1677090IPR005539ELK domain
PROSITE profilePS5007111.5890153IPR001356Homeobox domain
SuperFamilySSF466891.58E-1692155IPR009057Homeodomain-like
SMARTSM003891.9E-1092157IPR001356Homeobox domain
CDDcd000865.07E-1193152No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2597153IPR009057Homeodomain-like
PfamPF059204.7E-18110149IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MPKLRTKPRC MTGVSPGEGT GATMSDEDDD QAESDTNLYD GNLDGLDSMG FGPLVPTETE  60
RSLMERVRQE LKHEFKQDYK EKIVDIREEI LRKRRAGKLP GDTTSHLKAW WQTHSKWPYP  120
TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSSPSGSSS KSKRKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146165RKRNWHSSPSGSSSKSKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1301s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700000.0KP770000.1 UNVERIFIED: Populus tomentosa KNOTTED1-like homeobox gene 3-like (Potri.018G114100) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017948.13e-99PREDICTED: homeobox protein knotted-1-like LET12
SwissprotP480004e-90KNAT3_ARATH; Homeobox protein knotted-1-like 3
SwissprotP480013e-90KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLB9IMJ98e-98B9IMJ9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12200.11e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.23e-88KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]