PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1313s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27353.4 Da    PI: 10.2408
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1313s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.6e-221662349
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            i n+sn  vtfskRr g++KKA+EL++LC+aev++i+fs+  k++ +
  SapurV1A.1313s0050.1.p 16 IPNESNLMVTFSKRRSGLFKKASELCTLCGAEVSIIVFSPGKKVFSF 62
                            889*************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.507666IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-29665IPR002100Transcription factor, MADS-box
CDDcd002651.36E-33774No hitNo description
SuperFamilySSF554551.96E-26777IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-17828IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MARKSKGRQK LEMVKIPNES NLMVTFSKRR SGLFKKASEL CTLCGAEVSI IVFSPGKKVF  60
SFGHPSVEKV MERYVTGNLP QTSGAFLLIE AHRNARVHEL NMQLTQVVNQ MEVEKKRGEE  120
LDRMEKAGKS QNWWENPIQE LGLAQLEQLK ASLQYLKQDV TRHAKQILIQ NSTPPQPFIA  180
ANPSSSGNLP FDTRNTGFFS NMVVPPFNTN MSGTPFNTNM AAGPFNASTV MPPFGYSLGY  240
GNSFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A6e-16783177Myocyte-specific enhancer factor 2A
3kov_B6e-16783177Myocyte-specific enhancer factor 2A
3kov_I6e-16783177Myocyte-specific enhancer factor 2A
3kov_J6e-16783177Myocyte-specific enhancer factor 2A
3p57_A6e-16783177Myocyte-specific enhancer factor 2A
3p57_B6e-16783177Myocyte-specific enhancer factor 2A
3p57_C6e-16783177Myocyte-specific enhancer factor 2A
3p57_D6e-16783177Myocyte-specific enhancer factor 2A
3p57_I6e-16783177Myocyte-specific enhancer factor 2A
3p57_J6e-16783177Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1313s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043074.11e-162PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLB9IJA61e-159B9IJA6_POPTR; Uncharacterized protein
STRINGPOPTR_0017s07460.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-65AGAMOUS-like 62