PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1360s0110.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB

Protein Properties

Length: 195aa MW: 21892.8 Da PI: 8.328

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1360s0110.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.1e-19	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+++v+ +G ++Wkt+a + g++R++k+c++rw++yl SapurV1A.1360s0110.1.p 18 RGAWTAEEDSKLARCVEVHGAKRWKTVALKSGLNRCGKSCRLRWLNYL 65 89********************************************97 PP
2	Myb_DNA-binding	50.4	5e-16	71	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l SapurV1A.1360s0110.1.p 71 RGNISCEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 116 677788**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.764	13	65	IPR017930	Myb domain
SMART	SM00717	6.8E-15	17	67	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.54E-29	18	112	IPR009057	Homeodomain-like
Pfam	PF00249	3.9E-17	18	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-23	19	72	IPR009057	Homeodomain-like
CDD	cd00167	6.69E-11	20	65	No hit	No description
PROSITE profile	PS51294	25.51	66	120	IPR017930	Myb domain
SMART	SM00717	1.9E-14	70	118	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-14	71	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-25	73	120	IPR009057	Homeodomain-like
CDD	cd00167	1.04E-10	77	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MAPKNAVTDA SPKKVTSRGA WTAEEDSKLA RCVEVHGAKR WKTVALKSGL NRCGKSCRLR 60 WLNYLRPNIK RGNISCEEED LIIRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNSHLSKKI 120 TNQTGKEKMA DQPSTAPLAI DEVESSREAR NLETGNFDVN EFLDFSAEGS EWVDKSLQLD 180 GIQWIIDGEE VSIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-28	18	120	4	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1360s0110.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032038.1	1e-108	PREDICTED: trichome differentiation protein GL1-like
Swissprot	P10290	2e-50	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	B9GYD5	1e-100	B9GYD5_POPTR; Uncharacterized protein
STRING	POPTR_0003s07680.1	1e-101	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2148	32	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	7e-52	myb domain protein 66

Link Out ? help Back to Top
Phytozome	SapurV1A.1360s0110.1.p

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]