PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1363s0020.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 352aa    MW: 38930.2 Da    PI: 9.1987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1363s0020.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87.3e-56271541128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+++yL++k+++ ++++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tg
  SapurV1A.1363s0020.3.p  27 LPPGFRFHPTDEELITHYLQNKISDADFSC-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTG 112
                             79****************************.89***************99999********************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             kdke++++ + +l+g+kktLvfy+grap+gekt+Wvmheyr+
  SapurV1A.1363s0020.3.p 113 KDKEIFNSvTLQLIGMKKTLVFYRGRAPRGEKTNWVMHEYRV 154
                             ******9878889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-6424176IPR003441NAC domain
PROSITE profilePS5100560.41327176IPR003441NAC domain
PfamPF023653.2E-2928154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MKPTGDKGKK QVEKEKEMEG DAKEETLPPG FRFHPTDEEL ITHYLQNKIS DADFSCRAIG  60
DVDLNKCEPW DLPGKAKMGE KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEIFNS  120
VTLQLIGMKK TLVFYRGRAP RGEKTNWVMH EYRVHAKAAF RASKQDEWVV CRIFQKSAGP  180
KKYPPNQSRT GNPFYNLEIG PSVMPPQMMQ AAADNFQLPI GRNYMMSNAE LQAELTRVFR  240
AGGSAGINLP MQSPLNNSYS VGGGGGGGGG CFTVSGLNLN LGGATSQPVM RPMPPPAMNQ  300
QDATPSMMAS AGSFAVEQAG YGAEMNGANG HSNRFMGMQQ CMDLENYWPP Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-572618216171NO APICAL MERISTEM PROTEIN
1ut4_B6e-572618216171NO APICAL MERISTEM PROTEIN
1ut7_A6e-572618216171NO APICAL MERISTEM PROTEIN
1ut7_B6e-572618216171NO APICAL MERISTEM PROTEIN
3swm_A8e-572618219174NAC domain-containing protein 19
3swm_B8e-572618219174NAC domain-containing protein 19
3swm_C8e-572618219174NAC domain-containing protein 19
3swm_D8e-572618219174NAC domain-containing protein 19
3swp_A8e-572618219174NAC domain-containing protein 19
3swp_B8e-572618219174NAC domain-containing protein 19
3swp_C8e-572618219174NAC domain-containing protein 19
3swp_D8e-572618219174NAC domain-containing protein 19
4dul_A6e-572618216171NAC domain-containing protein 19
4dul_B6e-572618216171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1363s0020.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445784.10.0NAC domain-containing protein 92 isoform X2
TrEMBLA0A3N7HVG40.0A0A3N7HVG4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-118NAC domain containing protein 38