PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1381s0060.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 318aa MW: 35924.2 Da PI: 6.6779

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1381s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.3	4.2e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL++kv++++++ +++ +vd++++ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tg SapurV1A.1381s0060.1.p 5 LPPGFRFHPTDEELITCYLTRKVSDTSFTS-KAMVDVDLNRCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTG 90 79***********************999.88***********988999***************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 kdke+++ g lvg+kktLvfykgrap+gek++Wvmheyrle SapurV1A.1381s0060.1.p 91 KDKEIFR-AGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 ***.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-63	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.837	5	151	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT CYLTRKVSDT SFTSKAMVDV DLNRCEPWDL PGKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL ENNHPFKSTK EEWVVCRVFQ KSAEVKKPQQ EPSSQQSLGS PCDTNSIAND 180 QFGDIELLNL NNIANSSSGF NNVLAHSYSN ESNVNMDMQM NWAAAREAAT LPSFPWPSGL 240 LSTNLTMNSL LLKALQLRSY QQREATATNY SFLTNGIAHD QFGADLGSNF QASSSRVLDS 300 VPQPQQEQPF NLDSVNW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_B	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_C	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_D	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_A	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_B	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_C	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_D	2e-56	4	157	19	174	NAC domain-containing protein 19
4dul_A	2e-56	4	157	16	171	NAC domain-containing protein 19
4dul_B	2e-56	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1381s0060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438025.1	0.0	NAC domain-containing protein 92
TrEMBL	A0A2K1Y9E5	0.0	A0A2K1Y9E5_POPTR; Uncharacterized protein
STRING	POPTR_0012s05280.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-109	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	SapurV1A.1381s0060.1.p