PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1388s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 437aa    MW: 48344.1 Da    PI: 6.4055
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1388s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.99e-32521941128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                             lp+G++F+P+d +l+ e+L++k++  +    + ++e+i+++d    i++++P +Lp  +k++ ++++fF++++++y+tg+rk+r+  
  SapurV1A.1388s0020.1.p  52 LPVGVKFDPSDAQLL-EHLEAKCAVGNskphVFIDEFIPTLDgdkgICYTHPANLP-GAKKDGNSVHFFHRTNNAYSTGQRKRRKih 136
                             799************.99***9887765665333445776656667**********.55678899*******************867 PP

                     NAM  78 ......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    +s +W++tg++k+v++ +g ++g+kk++v+y  +++ +k+ k++Wvmh+y+l
  SapurV1A.1388s0020.1.p 137 cevgsdEESVRWHKTGRTKSVID-NGVQKGCKKIMVLYksSKKGSKPDKSKWVMHQYHL 194
                             77776666999************.999***********4434666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3836213IPR003441NAC domain
PROSITE profilePS5100530.02152213IPR003441NAC domain
PfamPF023653.7E-1353194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MARAWLIDGR SIARKVSRSS AYQIKDCGAN RECPKCHCHI DNSDVAQEWP GLPVGVKFDP  60
SDAQLLEHLE AKCAVGNSKP HVFIDEFIPT LDGDKGICYT HPANLPGAKK DGNSVHFFHR  120
TNNAYSTGQR KRRKIHCEVG SDEESVRWHK TGRTKSVIDN GVQKGCKKIM VLYKSSKKGS  180
KPDKSKWVMH QYHLGTDEDE KEGEFVVSKI FYQQKGTERN DDNVLIEDND ILSHQTSPRT  240
PNPNPPRPAK SVMYNDAIAD DNMMQLPVQN NDIKEEAPDV PAHVFQLEGD VEFPEWFAGE  300
SQAVENSDFD GLDDSLLCNE IFDSAPRVPN NSGAKRVSCT GMAHNTNEEN ENSNEPCGIA  360
ELENLDLDTP PDFHLAILIC SAGSAAWLSG KYPWMARPIM KTRGGPKAST NKNHLKVLRC  420
PFSGRSSGIT ALSSAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1388s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369935.20.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1
TrEMBLA0A2K2C8440.0A0A2K2C844_POPTR; Uncharacterized protein
STRINGPOPTR_0001s35490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.13e-87NAC domain containing protein 44