PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1408s0100.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ZF-HD

Protein Properties

Length: 234aa MW: 26289.3 Da PI: 8.1798

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1408s0100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.7	4.4e-31	3	59	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++v+Y+eC++NhAas+Ggha DGCgEfmp+ ++eg+ + l+CaACgCHRnFHRr+ + SapurV1A.1408s0100.1.p 3 QSVKYRECMRNHAASIGGHANDGCGEFMPHGDDEGSRDWLTCAACGCHRNFHRRQGS 59 5799************************9999******************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.2E-28	5	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-16	5	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.4E-27	6	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.028	7	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.39E-16	136	204	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-27	137	204	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.9E-25	144	201	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDQSVKYREC MRNHAASIGG HANDGCGEFM PHGDDEGSRD WLTCAACGCH RNFHRRQGSA 60 NRQHRQQLLL SPPPITQQFL LYGVPTAKNT NPVHDFIPRP HEDDDDLDDP DHDRRSETPE 120 RGEMNVMGSG GEGFMVKSAG SSSKRLRTKF TQEQKERMLE FAEKIGWRRM RKHDDMALNQ 180 FCNEIGVKRK VLQVWMHNNK NANRHRDGTP RVPADGAPPS PPPSAPPHQP VGG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-24	142	202	16	75	ZF-HD homeobox family protein
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1408s0100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003997.1	1e-111	PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBL	A0A3N7HD75	1e-108	A0A3N7HD75_POPTR; Uncharacterized protein
STRING	POPTR_0013s11330.1	2e-99	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15092	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-50	homeobox protein 22

Link Out ? help Back to Top
Phytozome	SapurV1A.1408s0100.1.p