PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1446s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 120aa    MW: 13776.8 Da    PI: 10.8875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1446s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-13795488
                            E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83
                            +l+  dv    r+++p + ++e+     gg+     +l ++d+sg  +s+++ +  r k+++   v+++GW++Fv+a+gLk+g  +vF 
  SapurV1A.1446s0040.1.p  7 TLSETDVE--VRFSVPSRWFRENlysrfGGNFV--LDLPVKDRSGevQSFRFSV--RTKGKHlkPVISRGWRKFVRAKGLKAGNEIVFV 89
                            55344443..468************99977744..479*******555555555..55555555************************9 PP

                            E-SS.S CS
                      B3 84 ldgr.s 88
                            ++++ +
  SapurV1A.1446s0040.1.p 90 RENDpE 95
                            776543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0034108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-15594IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-13593IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-156106No hitNo description
PfamPF023625.9E-101593IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MANLRKTLSE TDVEVRFSVP SRWFRENLYS RFGGNFVLDL PVKDRSGEVQ SFRFSVRTKG  60
KHLKPVISRG WRKFVRAKGL KAGNEIVFVR ENDPEIGTEY TVDVIKEIRL FGTDIQGRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1446s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002456.13e-64PREDICTED: uncharacterized protein LOC105109432
TrEMBLB9GZ502e-63B9GZ50_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00470.13e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2850123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-07auxin response factor 16