PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1446s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 106aa    MW: 12188 Da    PI: 11.1647
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1446s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-122811588
                            -EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                      B3 15 rlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88
                            r+++p + ++e+     gg+     +l ++d+sg  +s+++ +  r k+++   v+++GW++Fv+a+gLk+g  +vF ++++ +
  SapurV1A.1446s0050.1.p  2 RFSVPSRWFRENlysrfGGNFV--LDLPVKDRSGevQSFRFSV--RTKGKHlkPVISRGWRKFVRAKGLKAGNEIVFVRENDpE 81
                            6889999999999999877744..4799******555555555..55555555************************9776543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.671194IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-11279IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-13292No hitNo description
PfamPF023621.1E-9279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-12280IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
VRFSVPSRWF RENLYSRFGG NFVLDLPVKD RSGEVQSFRF SVRTKGKHLK PVISRGWRKF  60
VRAKGLKAGN EIVFVRENDP EIGTEYTVDV IKEIRLFGTD IQGRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1446s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002456.11e-53PREDICTED: uncharacterized protein LOC105109432
TrEMBLB9GZ508e-53B9GZ50_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00470.11e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-07auxin response factor 17