PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1446s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 109aa    MW: 12684.6 Da    PI: 10.3776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1446s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.5e-12690289
                            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                             k+l + d   ++r+vl+ + ++ +  ++e    l+++de+g++W++++++  ++s+r  l++ W  Fv++++Lk+gD++ + ld++++
  SapurV1A.1446s0060.1.p  6 TKKLNNIDI--ERRIVLSENLIKGFPRDHE--AYLKFKDEDGKVWTFRCRVpPGGSSRPALSGDWFVFVRSKQLKVGDVIEIALDREKD 90
                            555533333..3457888888877755543..47***************9988888889*********************999987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.221103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-14290IPR015300DNA-binding pseudobarrel domain
CDDcd100175.70E-12389No hitNo description
SuperFamilySSF1019369.55E-13489IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-45103IPR003340B3 DNA binding domain
PfamPF023621.8E-91690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEKIFTKKLN NIDIERRIVL SENLIKGFPR DHEAYLKFKD EDGKVWTFRC RVPPGGSSRP  60
ALSGDWFVFV RSKQLKVGDV IEIALDREKD RSGVDQFTIR FKKQLDRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1446s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.17e-57PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AZU89e-55A0A2K2AZU8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00440.11e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527