PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1486s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 148aa MW: 16478.1 Da PI: 8.0786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1486s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.1	0.00018	37	142	6	52
HHHHHHHHHHHHHHHHHHHCTSCCC.............................................................. CS HLH 6 nerErrRRdriNsafeeLrellPkas...........................................................ka 33 +rE +RR+ a++++ e P+++ +a SapurV1A.1486s0090.1.p 37 TIRESKRRKSCPAALDKIAEFTPSNFsftfdtrfstssqeftpkfgsfnlvsstrerpddhtalcfhqssenkdgghrddkqqvgGA 123 68********************888*****************************************************888 PP TTS-STCHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIk 52 ++l +++L++Av+ I+ SapurV1A.1486s0090.1.p 124 CEERLVNISTLRRAVDGIR 142 8888**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MAENSIEKPS KIQDSSRDPP SLATSSSSSS QEEKQETIRE SKRRKSCPAA LDKIAEFTPS 60 NFSFTFDTRF STSSQEFTPK FGSFNLVSST RERPDDHTAL CFHQSSENKD GGHRDDKQQV 120 GGACEERLVN ISTLRRAVDG IREKKKQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1486s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023903650.1	5e-21	vacuolar protein sorting-associated protein VTA1 homolog
TrEMBL	B9IHJ7	5e-65	B9IHJ7_POPTR; Uncharacterized protein
STRING	POPTR_0016s02860.1	6e-66	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16020	2	2

Link Out ? help Back to Top
Phytozome	SapurV1A.1486s0090.1.p