PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1532s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 255aa    MW: 27985 Da    PI: 7.7011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1532s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000455577123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y C  C++ F+++  L  H++ H
  SapurV1A.1532s0070.1.p 55 YDCRFCDRKFPSSQALGGHQNFH 77
                            88******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.19E-65483No hitNo description
PROSITE profilePS5015711.3235582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MERGSSSSTA DVEDKKMKGK VLDQEPAMDP ESDPLLVLRL FTGEVGDDDE ETIEYDCRFC  60
DRKFPSSQAL GGHQNFHKKE RAVMKRQQDI EANPFGILYP FHATASAMAA FRSHNHDPFN  120
NKNSLNNNMG IKSQSMIQKP SHYRYPNSLL AGSRSFIGPA WWSRQSDLSS QPSYMRGSAW  180
LARARNSYPT LASLLGRRPQ QVGGSNQGGS PSLSNLSSLS SQRIGSVESS GAGASSWNEQ  240
SHDSPAELDL TLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1532s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2855323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-13C2H2 family protein