PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1580s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 245aa    MW: 28054.2 Da    PI: 8.118
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1580s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.1e-50201461128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrF+Ptdeelv +yLk+k+ + +l++ +vi++v+++k++Pw+Lp  +   e+e yfF+++++ky++g+r nr+ +sgyWk+tg
  SapurV1A.1580s0010.1.p  20 LPPGFRFQPTDEELVFQYLKRKILSCPLPT-SVIPDVNVCKYDPWELPGDM---ESERYFFCNKETKYPNGNRVNRSSASGYWKSTG 102
                             79***************************9.99***************554...5799***************************** PP

                     NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk+++s+   ++++vg+kktLvfy+g+ap++++tdWvmheyrl
  SapurV1A.1580s0010.1.p 103 SDKQIISSrwkNSHAVGMKKTLVFYRGKAPRSSRTDWVMHEYRL 146
                             ******998888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5716183IPR003441NAC domain
PROSITE profilePS5100555.55220183IPR003441NAC domain
PfamPF023658.2E-2721146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MERVFGMEMF NFIRDGKNRL PPGFRFQPTD EELVFQYLKR KILSCPLPTS VIPDVNVCKY  60
DPWELPGDME SERYFFCNKE TKYPNGNRVN RSSASGYWKS TGSDKQIISS RWKNSHAVGM  120
KKTLVFYRGK APRSSRTDWV MHEYRLVNAG EETTDCNFPQ TENSAQNSSY QLDNWVVCRV  180
FLKNKGGTRN EIIETCTNNH ARRTRPGLFD SVSSHSSSSS NSSSITDISS NEEDDELSSS  240
HNFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-482018417166NO APICAL MERISTEM PROTEIN
1ut4_B1e-482018417166NO APICAL MERISTEM PROTEIN
1ut7_A1e-482018417166NO APICAL MERISTEM PROTEIN
1ut7_B1e-482018417166NO APICAL MERISTEM PROTEIN
4dul_A1e-482018417166NAC domain-containing protein 19
4dul_B1e-482018417166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1580s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700130.0KP770013.1 Populus tomentosa trans-cinnamate 4-monooxygenase (Potri.015G102100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023926.11e-136PREDICTED: NAC transcription factor 25-like
SwissprotQ9FY931e-69NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0F6V0521e-129A0A0F6V052_POPTO; Trans-cinnamate 4-monooxygenase
STRINGPOPTR_0012s10530.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-70NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]