PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1596s0040.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 235aa MW: 25666.4 Da PI: 5.8118

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1596s0040.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	9.9e-11	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L++l+P + +k Ka +L + ++YI+sLq SapurV1A.1596s0040.2.p 155 SHSLAERARREKISERMNMLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 202 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.18E-17	149	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-8	149	206	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-18	151	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.643	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-8	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDPPLINETS FSAANPSSYT LAEIWPFPPP PPPPTRSGLR MDNLADPDGS LEESTLTDQS 60 SGNGTRIRKT RDFSSEKDDS TKIVSTTTSA NDLNDSNGKR RKITGSRSVN DDSRAETEAS 120 SAANNKSAEQ SSKASEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MNMLQDLVPG 180 CNKVIGKALV LDEIINYIQS LQCQVEFLSM KLEAVNSRMN TSTTIEGLHP KDVS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1596s0040.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441650.1	1e-151	transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	5e-80	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2K1XJ53	1e-150	A0A2K1XJ53_POPTR; Uncharacterized protein
STRING	POPTR_0015s07930.1	1e-150	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-75	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1596s0040.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]