PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1621s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 194aa    MW: 21529 Da    PI: 7.6043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1621s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-06164190430
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                             +h+ +Er RR +iN+++  L++++P +
  SapurV1A.1621s0020.2.p 164 SHSLAERVRRGKINERLRCLQDIVPGC 190
                             8************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-7158191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.07E-5158192No hitNo description
PROSITE profilePS5088811.28160193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-7163190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MADFAADLQS FRPPYPFLDI DPSMVALNQF IEGNQGILDD PSVDNIHSFM PFTIDNFFSH  60
QAPEFPGNFA ESFAAIFHQN DQNAMPVSQP PTAPGKESDF HEGKKRKATG VSESCSMNSS  120
PQVSESGSKR RNSTRRGKGV KSNEDDKPKE VFHVRARRGQ ATDSHSLAER VRRGKINERL  180
RCLQDIVPGC YKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1621s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2342730.0KM234273.1 UNVERIFIED: Populus alba x Populus glandulosa cultivar Hyeonsasi brassinosteroid sinaling protein-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438676.11e-113transcription factor BEE 3 isoform X2
TrEMBLA0A2K1Y9C01e-111A0A2K1Y9C0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05210.11e-110(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.21e-30BR enhanced expression 3