PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1647s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 259aa    MW: 28140.5 Da    PI: 6.0725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1647s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12194239655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  SapurV1A.1647s0020.1.p 194 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKVLQ 239
                             689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.532188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16191252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-12192243No hitNo description
Gene3DG3DSA:4.10.280.106.0E-16193252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MQPTPAGSSN ASAGGGSAGG GGGIARYRSA PATWLEALLE EEEDPLKQSQ NLTQLLTSNT  60
PPSRDSVPFN ASRASVEPGL FEPVCSFQRQ NSSPADFLGN SGIGSDQGYF SSYGVASNYE  120
CTTANMEVSP SDKRARAVEF QNPSATYPPP PLKGEQTGPL RASSLIEMEM DKLLEDSVPC  180
RVRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK QTNTADMLDE AVEYVKVLQR  240
QIQELTEQQR KCKCIAKE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1647s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325537.31e-156transcription factor bHLH81
SwissprotQ9C8P84e-81BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2K1WRC81e-155A0A2K1WRC8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10900.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-71bHLH family protein