PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1679s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 118aa    MW: 13775.7 Da    PI: 11.7725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1679s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.6e-1316971390
                            TT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3 13 sgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                            ++rl +p     ++g+++    + + ++d+  + W+++l++r++ +     v+t+ W +Fvk++gL++gD vvF++++ ++ 
  SapurV1A.1679s0020.1.p 16 THRLAIPTANRGDFGIPPGqHAINIEVTDTLEQPWTFRLSIRRNNNPnprPVFTGEWIRFVKEKGLRAGDRVVFSRQQVEGN 97
                            46677776665555443331345788899999*******994444444579************************7765544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0934107IPR003340B3 DNA binding domain
CDDcd100179.93E-128107No hitNo description
SuperFamilySSF1019363.14E-138100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-16897IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-91797IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEQHRRPKVL SRTDITHRLA IPTANRGDFG IPPGQHAINI EVTDTLEQPW TFRLSIRRNN  60
NPNPRPVFTG EWIRFVKEKG LRAGDRVVFS RQQVEGNGVQ YRIRAERKIF KYWVNVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1679s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.15e-57PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2K2AYH51e-55A0A2K2AYH5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23010.14e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-07B3 family protein