PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1685s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 272aa    MW: 30364.7 Da    PI: 9.7448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1685s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-14100145348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +WT+eE++l++ + k++G+g+W+ I+r +   Rt+ q+ s+ qkyl
  SapurV1A.1685s0020.1.p 100 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVISRTPTQVASHAQKYL 145
                             8*****************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.92493149IPR017930Myb domain
SuperFamilySSF466894.11E-1694148IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-1696147IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-1397148IPR009057Homeodomain-like
SMARTSM007172.0E-1397147IPR001005SANT/Myb domain
PfamPF002499.2E-13100145IPR001005SANT/Myb domain
CDDcd001678.14E-12100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKWEMDILSP ASYHSSSNWL PEESKNTKWT PAENKELELD VSYIEAGLIP VPGYSSSPFT  60
LDWVNGNGYG YDGFKQSYGL GGKRSSTGRP TDQERKKGVP WTEEEHKLFL MGLKKYGKGD  120
WRNISRNFVI SRTPTQVASH AQKYLIRQLS GGKDKRRASI HDITTVNLNE TRTPSPENKI  180
TSPDQSGAIS QQPNSAAMPR THFQWNQPNI GATLAFNSTN ANMFMSSPYG INSYGLKMQG  240
QNPHRGAVHD SYSGQQNMGF QMQSSQHYPH G*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1685s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314123.10.0transcription factor DIVARICATA
RefseqXP_024464763.10.0transcription factor DIVARICATA
RefseqXP_024464764.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-116DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9HP730.0B9HP73_POPTR; MYB family protein
STRINGPOPTR_0009s04730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.16e-76Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]