PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1704s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 131aa    MW: 14024.1 Da    PI: 8.7772
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1704s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601132.1e-3541128187
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dP+yG+v++il+lqqq
  SapurV1A.1704s0040.1.p  41 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRHEAIVTISYEAQARLSDPIYGCVSTILALQQQ 127
                             7***********************9989**********************************************************9 PP

                  DUF260  87 l 87 
                             +
  SapurV1A.1704s0040.1.p 128 V 128
                             8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.54440130IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-3541128IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MTEPPGDAMS ETRRKGIGKR ATTMSDESQP ESEPAPTPAS PCGACKFLRR KCISGCIFAP  60
HFGSDQGAAR FAAVHKVFGA SNVSKLLLHI PLNRRHEAIV TISYEAQARL SDPIYGCVST  120
ILALQQQVLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3336128697LOB family transfactor Ramosa2.1
5ly0_B1e-3336128697LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1704s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319718.22e-86LOB domain-containing protein 20
SwissprotQ9SRV31e-59LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A3N7HEU14e-85A0A3N7HEU1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s06070.16e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-59LOB domain-containing protein 20