PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1711s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 715aa    MW: 83264.5 Da    PI: 8.698
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1711s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.22.8e-231197190
                    FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                            kfY+ YA+++GF++rk k ++   ng i kr f Csk+g+r +++ + + ++ +r+etrtgC+ak++ + e +gkw+v+++++eHnH+l
  SapurV1A.1711s0020.1.p 11 KFYEGYANKIGFRTRKGKVQRL-SNGAIRKRFFFCSKQGFRLKKQAD-KITKYKRKETRTGCDAKIQFTVE-NGKWVVSQFNQEHNHHL 96
                            6*****************9998.8899****************9999.99999*****************9.***************99 PP

                    FAR1 90 a 90
                             
  SapurV1A.1711s0020.1.p 97 E 97
                            6 PP
2Myb_DNA-binding51.42.4e-16630672145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w 
  SapurV1A.1711s0020.1.p 630 RGNLTPEEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWI 672
                             7999******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-201197IPR004330FAR1 DNA binding domain
PfamPF105515.5E-21206300IPR018289MULE transposase domain
PROSITE profilePS509669.483480518IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-5492518IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-6493520IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:1.10.10.603.0E-10610636IPR009057Homeodomain-like
SuperFamilySSF466893.17E-21610681IPR009057Homeodomain-like
PROSITE profilePS500904.356611624IPR017877Myb-like domain
PROSITE profilePS5129425.687625679IPR017930Myb domain
SMARTSM007172.9E-15629677IPR001005SANT/Myb domain
PfamPF002493.7E-15630672IPR001005SANT/Myb domain
CDDcd001672.56E-10634673No hitNo description
Gene3DG3DSA:1.10.10.608.4E-20637674IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MEFSSEEEAY KFYEGYANKI GFRTRKGKVQ RLSNGAIRKR FFFCSKQGFR LKKQADKITK  60
YKRKETRTGC DAKIQFTVEN GKWVVSQFNQ EHNHHLENQR HITRSCTETS EACLILTENN  120
AEMAKDAGTP KSTELCNMVC STSVHDKTRD GKHPEEVQNL LNYLRHLQVE DLSFFYAVQL  180
DSNNRLKNLF WRDGRSMVDY DYFGDVLILD TTLRMDKYDM ICAPFWGLNH HRQYVMFGCA  240
FLLDESKESF VWLLETFMEA MGRKQPKKIV TDENQVMVEA VKVVLLDAEH QFGAWFIRRN  300
ALKHVFAFYS QPAFESIFNA CISDCQTEEE FESKWDFLLK KFNLRENAWL NNLYLSRERW  360
ANVFHKGTFS AGIKWCKDII NVFQNSTGDT TNMSMFVHQY LKVVETQRLE ELYEDLRCGE  420
TTKVLILNGS AMEKQAANIY TRTIFSIFQG ELVKSLSVAI EEIGGDGTNA TFKLTEEGQK  480
ESIVEFSCLD SNLACSCKKY ESEGILCVHA LKVLNARNIF DIPAQYILKR WTICAKDSVA  540
EDEHGQKLAD QKQQPMIFLL KKTLDVIYKT SAFEDCQKIA MHYLDKASKR VEVVLRAKTT  600
DHFKSRKGLR RTGKSCRLRW LNYLKPDVKR GNLTPEEQLL ILELHSKWGN RWSKIAQHLP  660
GRTDNEIKNY WITRVQKRAR LLRIDANSTA FQGIIRCLWM PRLLEYVIES NLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1661167940108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1711s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443203.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1XBC70.0A0A2K1XBC7_POPTR; Uncharacterized protein
TrEMBLU7DWW60.0U7DWW6_POPTR; Uncharacterized protein
STRINGPOPTR_0149s00230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5