PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1711s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 787aa    MW: 89627.6 Da    PI: 5.9887
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1711s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.11.4e-23193279190
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             +fY+ YA+++GF++rk k ++   ng+i kr f Csk+g+r +++ + + ++ +r+etrtgC+ak++ + e +gkw+v+++++eHnH
  SapurV1A.1711s0030.1.p 193 RFYEGYANKIGFRTRKGKVQRL-SNGTIRKRFFICSKQGFRLKKQAD-KITKYKRKETRTGCDAKIQFTVE-NGKWVVSQFNQEHNH 276
                             5*****************9998.7888****************9999.99999*****************9.*************** PP

                    FAR1  88 ela 90 
                             +l 
  SapurV1A.1711s0030.1.p 277 HLE 279
                             996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-21193279IPR004330FAR1 DNA binding domain
PfamPF105519.6E-22386480IPR018289MULE transposase domain
PROSITE profilePS509669.483660698IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-5672698IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-6673700IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MAETSDSAAG NDPQTSYIDQ DAAHGSSDSF WHNVYSSNQD KASTSEWGDS GNGLEFAFGS  60
SVKGAGVSSL DYEWGHVFEN SSKKKRKKKN TDVSSSTALN SASDLSEALS QISKDLSLSS  120
SSSSGEIDED RENEEADLLK SHGENLQAEY LSECNGDEDE IQATSVFGAS GSKDSCQKTE  180
IGMEFSSEEE AYRFYEGYAN KIGFRTRKGK VQRLSNGTIR KRFFICSKQG FRLKKQADKI  240
TKYKRKETRT GCDAKIQFTV ENGKWVVSQF NQEHNHHLEN QRHTTRSCTE TSEARLILTE  300
NNAEMAKDAG TPKSTELCNM ICSTCVHDKT RDGKHPEEVQ NVLNLHLQVE DLSLFYIVQL  360
DSNNGLKNLF WRYGRSMVDY DYFGDVLILD TTLRMDKYDM ICAPFWGLNH HRQYVMFGCA  420
FLLDESKESF VWLLETFMEA MGRKQPKTIV TDENQVMVEA VKVVLLDAEH QFGAWFIRRN  480
ALKHVFEFYS QPAFESIFNT CISNCQTEEE FESKWDFLLK KFNLHENAWL NNLYLSRERR  540
ANVFHKETFS AGIKWCKDII NVFQNSTSDT MNLSMFVHQY LKVVETQRLE ELYEDLRCGE  600
TTKVLILSGS AMEKQAANIY TRTIFSIFQG ELVKSLSVAI EEIGGDGTNA TFKLTEEGQK  660
ESIVEFSCLD SNLACSCKKY ESEGILCVHA LKVLNARNIF HIPAQYILKR WTTCAKDSVA  720
EDENGQKLAD QKQQPMIFLL RKTLDVIYKT SAFEDCQKIA MHYLDNASKR VEVVLRAKTT  780
NHLKSRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288KKKRKKK
28387KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1711s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443203.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1XBC70.0A0A2K1XBC7_POPTR; Uncharacterized protein
STRINGPOPTR_0149s00230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-98FAR1-related sequence 5