PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1711s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HB-other

Protein Properties

Length: 151aa MW: 17352.6 Da PI: 9.9837

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1711s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.5	1.1e-08	46	85	16	55
HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 e+ Fe+++ + + LA++l+L r+V+ WFq rRa+e SapurV1A.1711s0040.1.p 46 ENIFEEDNRIPNSIQLSLAEQLNLVPRKVQDWFQKRRARE 85 67899966666666778*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.8E-4	39	92	IPR001356	Homeobox domain
PROSITE profile	PS50071	10.673	46	88	IPR001356	Homeobox domain
CDD	cd00086	3.19E-5	46	89	No hit	No description
Pfam	PF00046	3.6E-6	46	85	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.92E-7	46	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-8	48	90	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MDFERVRGGG SAGKKRDLEL ESGQASSSSN DGAENPLVQK KPRFSENIFE EDNRIPNSIQ 60 LSLAEQLNLV PRKVQDWFQK RRAREMSKQM DYEILKEDNE LLKKANERLR RQIEFLIPLV 120 KSPPRKIPPS RERIQRAFSP CSDESSTPIQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1711s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-13	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	SapurV1A.1711s0040.1.p