PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1729s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YC

Protein Properties

Length: 295aa MW: 32237.5 Da PI: 5.0679

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1729s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.3	1.4e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t+ ++ +v++ ++fdfl +iv + SapurV1A.1729s0050.1.p 6 DTRFPAARIKKIMQADEDVGKIAQAVPVLVSKALELFLQDLCDNTYEITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.64E-20	3	89	IPR009072	Histone-fold
Pfam	PF00808	6.5E-20	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIAQA VPVLVSKALE LFLQDLCDNT YEITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REIVSKVPDY SHGHSDSTGD HRPLQKRKPN GDECIDSDEE 120 LKRSRMREMS HAGSSGRGRG RGRGRGRGRG ARNIERESSS RDLEPESCTI AQPSIENNSN 180 PGLVMDNGSE SKESVKENKR VSDTTNQPER NFDLNAEVND NEGAKAAAAV TATAATTTTS 240 SAPGSSAEPA AAETNHEEYP GWSLSEMDKM AIDPLQLAQL GKGLDEEEDY DEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	126	KRSRMR
2	138	148	RGRGRGRGRGR
3	140	149	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1729s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304814.1	1e-154	dr1-associated corepressor homolog isoform X2
TrEMBL	B9GXA0	1e-152	B9GXA0_POPTR; Uncharacterized protein
STRING	POPTR_0003s19130.1	1e-153	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-73	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	SapurV1A.1729s0050.1.p