PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1849s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 124aa MW: 14395.5 Da PI: 10.2798

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1849s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.4	4.5e-12	5	90	1	89
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l + d ++r+v++ + ++ + ++ l+++de+g++W++++++ ++s+r l++ W Fv++++Lk+gD++ + ld++ SapurV1A.1849s0040.1.p 5 FTKKLNNIDI--ERRMVISENLIKGFpR---GHEVYLKFKDEDGKVWTFRCRVpPGGSSRPSLSGDWFLFVRSKQLKVGDVIEIALDRE 88 5566633333..3468999999877742...35678*************9988888889*******************9999876 PP SE CS B3 88 se 89 ++ SapurV1A.1849s0040.1.p 89 KD 90 44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.966	1	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.6E-15	2	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.28E-13	3	89	No hit	No description
SuperFamily	SSF101936	4.71E-13	3	89	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0011	5	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-9	15	90	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MERIFTKKLN NIDIERRMVI SENLIKGFPR GHEVYLKFKD EDGKVWTFRC RVPPGGSSRP 60 SLSGDWFLFV RSKQLKVGDV IEIALDREKD RAGVDQFTIR VSKPTYAYND KPNVFYNRDL 120 RPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1849s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002452.1	4e-55	PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBL	A0A2K2AZU8	7e-56	A0A2K2AZU8_POPTR; Uncharacterized protein
STRING	POPTR_0003s00440.1	1e-56	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13561	5	27

Link Out ? help Back to Top
Phytozome	SapurV1A.1849s0040.1.p