PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1854s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 341aa    MW: 37457 Da    PI: 8.4823
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1854s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.24.2e-16265290126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +ktelC+ +++tGtC+yG++C+FaHg
  SapurV1A.1854s0030.1.p 265 WKTELCNKWQETGTCPYGNNCQFAHG 290
                             8************************8 PP
2zf-CCCH22.91.5e-07303328126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             ykt  Cr  +++G C+yG rC+F H+
  SapurV1A.1854s0030.1.p 303 YKTQACRMVLAGGVCPYGHRCHFRHS 328
                             9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-11261296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-19261297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638264292IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-9264291IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-13265290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-12298331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9298332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272302330IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5302329IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5303328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEVTQPPPSC SRPAPTQAAA HSPPFGYHQA NDHDQFASNF TSLYLSIFPP KPWLLPNSLS  60
FTPSTTASPT SSSPADEVAT DNRLRQARLI LEYQELCDHY NVSLSRLQTL TNELELIRQE  120
NADLRVANSE LVKLISLSSQ AAVMQNQTGR AFGINRDAAI ERRNNVNNVE RERVTLPKSI  180
SVRSSGYVKV SQPVPGNVST NAGGRDGASA NSSRSRVASQ LDQLVSGSCM QMQQRVYVPG  240
GGGGKRSEEE IAAGMELEVF NQGMWKTELC NKWQETGTCP YGNNCQFAHG IGELRPVIRH  300
PRYKTQACRM VLAGGVCPYG HRCHFRHSLT DQDRLLLGTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-23265328467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1854s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090420.0AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383398.20.0zinc finger CCCH domain-containing protein 14 isoform X1
TrEMBLA0A2I4KL090.0A0A2I4KL09_POPTR; C3H family protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-71C3H family protein