PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1854s0030.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 338aa    MW: 37094.6 Da    PI: 8.564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1854s0030.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.24.1e-16262287126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +ktelC+ +++tGtC+yG++C+FaHg
  SapurV1A.1854s0030.2.p 262 WKTELCNKWQETGTCPYGNNCQFAHG 287
                             8************************8 PP
2zf-CCCH22.91.5e-07300325126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             ykt  Cr  +++G C+yG rC+F H+
  SapurV1A.1854s0030.2.p 300 YKTQACRMVLAGGVCPYGHRCHFRHS 325
                             9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-11258293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-19258294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638261289IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-9261288IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-13262287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-12295328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9295329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272299327IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5299326IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5300325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEVTQPPPSC SRPAPTQAAA HSPPFGYHQA NDHDQFASNF TSLYLSIFPP KPWLLPNSLS  60
FTPSTTASPT SSSPADEVAT DNRLRQARLI LEYQELCDHY NVSLSRLQTL TNELELIRQE  120
NADLRVANSE LVKLISLSSQ AAVMQNQTGR AFGINRDAAI ERRNNVNNVE RERVTLPKSI  180
SVRSSGYVKV SQPVPGNVST NAGGRDGASA NSSRSRVASQ LDQLVSGSMQ QRVYVPGGGG  240
GKRSEEEIAA GMELEVFNQG MWKTELCNKW QETGTCPYGN NCQFAHGIGE LRPVIRHPRY  300
KTQACRMVLA GGVCPYGHRC HFRHSLTDQD RLLLGTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-23262325467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1854s0030.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090420.0AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444316.10.0zinc finger CCCH domain-containing protein 14 isoform X2
TrEMBLA0A2I4KL090.0A0A2I4KL09_POPTR; C3H family protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-72C3H family protein