PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1854s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 242aa    MW: 27931.3 Da    PI: 8.1449
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1854s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC67.42.5e-21981652691
                   NF-YC  26 ikkilkadedv..kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                             +k i+ +  ++    + ae+P+l++kacelfileltlr+wl++  +krrtl+++ i+ av +  +   
  SapurV1A.1854s0040.1.p  98 VKTIMIYKSKIftVLVIAETPILFAKACELFILELTLRAWLQTTACKRRTLQRCHISRAVREEGMLRN 165
                             56677666655115678*******************************************98776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.02E-1611163IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-2261158IPR009072Histone-fold
PfamPF008081.2E-7105157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNLNQSIEFD QATADPSPQE DGKAMPMNPS MLPHHQITTK ERREQNLDQF WNQQLLEIYN  60
STASKSSHLL PLARIKRVIK SDGEVKPNQL RQKWKVVVKT IMIYKSKIFT VLVIAETPIL  120
FAKACELFIL ELTLRAWLQT TACKRRTLQR CHISRAVREE GMLRNVLNRV VLCDHDKEDD  180
VATECLEEME SLHNMQTPFP FFDLKGEVMA DRHREEPRQL MIKPPMPSSD FTPGCSSKWA  240
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-174717019117HapE
4g92_C4e-174717019117HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1854s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444106.11e-104nuclear transcription factor Y subunit C-2
TrEMBLA0A2K1X6V11e-103A0A2K1X6V1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15090.12e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-22nuclear factor Y, subunit C2