PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1876s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 104aa    MW: 11823.2 Da    PI: 10.0523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1876s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-098312247
                            T-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                            + W++Ia +++ gRt++++k++w+++
  SapurV1A.1876s0010.1.p  8 R-WSLIAGRLP-GRTDNEVKNYWNSH 31
                            4.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.473136IPR017930Myb domain
SuperFamilySSF466892.96E-8737IPR009057Homeodomain-like
CDDcd001671.30E-6832No hitNo description
Gene3DG3DSA:1.10.10.601.7E-12833IPR009057Homeodomain-like
PfamPF002496.9E-7831IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MYFVHFFRWS LIAGRLPGRT DNEVKNYWNS HIRKKLESHR HVGFTRLRAE IPAARSKNQA  60
NDPETFIDFN GGKLEPTSKS SSGINLDLTL SIPSKNFESS DEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1876s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000470.16e-46PREDICTED: myb-related protein 308-like
RefseqXP_011000471.16e-46PREDICTED: myb-related protein 308-like
RefseqXP_011012518.16e-46PREDICTED: myb-related protein 308-like
RefseqXP_011012519.16e-46PREDICTED: myb-related protein 308-like
TrEMBLB9IEA02e-44B9IEA0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s04300.13e-45(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1689547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.15e-15myb domain protein 6