PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1925s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 180aa    MW: 20424.2 Da    PI: 9.5998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1925s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.5e-09956255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            r+  + +E++RR++++   ++L +l+P++       ls  + L +A  YIk Lq
  SapurV1A.1925s0040.1.p  9 RTDRKLMEKNRRNQMKALHSQLNSLVPQP------ALSVPDQLDEAASYIKRLQ 56
                            778899**********************6......5*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.22E-4660No hitNo description
SuperFamilySSF474597.46E-10873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5956IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-41361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEQNLSSSRT DRKLMEKNRR NQMKALHSQL NSLVPQPALS VPDQLDEAAS YIKRLQASLE  60
KMKEKRDRLM GMERANYISK NSSRGTITGS RSPRIEVREM GSTLEVVLMN GSDNLFMFNE  120
IIRALHEEGA EIINASLSAV EDNVFHTVHS KVRDSAHSMN TAARISQRLK MFVEDDREF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1925s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305793.22e-97transcription factor bHLH162
TrEMBLA0A2K2APU44e-96A0A2K2APU4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05320.12e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-39bHLH family protein