PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2125s0010.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 265aa MW: 28464.4 Da PI: 9.14

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2125s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	38.4	2.6e-12	5	29	38	62
zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62 ryWt GG+lrnvPvGgg+rk k+++ SapurV1A.2125s0010.2.p 5 RYWTLGGTLRNVPVGGGCRKGKRAK 29 9*******************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-6	5	27	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-7	5	27	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MSSLRYWTLG GTLRNVPVGG GCRKGKRAKT SSSSSSGETS RFHQQPQLLQ HNLAAPQNIL 60 ATNNSGNLSC PVLRNKESGN LVSPPPGMSP MGSYFPGGGL LTSLEAIQSL NTNQPPLQSF 120 PPQPLNQPVN LGGVLGETSN LGFLHGFNTV PPFGSQNQHQ IQFYHVGDRD TKSYEHSFYP 180 HNRESSIISS SRPATSSHDQ QQNWHHGFMN SSNPTVSDTA LWSTSTSTTV GHTNSNMINT 240 TVGSSPLIPD QWKHDHLPGF GPPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2125s0010.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377380.1	1e-137	dof zinc finger protein 1
TrEMBL	U5G111	1e-136	U5G111_POPTR; Uncharacterized protein
STRING	POPTR_0011s05410.1	1e-136	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-09	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	SapurV1A.2125s0010.2.p