PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2134s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family RAV
Protein Properties Length: 354aa    MW: 39569.6 Da    PI: 6.5276
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2134s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-094592154
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                            s++kGV   + +g W ++I+       +  r++lg+f +++eAa a++ a+ kl+
  SapurV1A.2134s0020.1.p 45 SKFKGVVPQP-NGHWGCQIYA------NhLRIWLGTFKSEKEAAMAYDSAATKLR 92
                            79****9777.8******999......44**********99***********998 PP
2B380.61.6e-25168262183
                             EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                             f k+ltpsdv+k++rlv+pkk+a ++               k  +++l + d+s + W+++++y+k+s++yv+t+GW++Fvk+n+Lk
  SapurV1A.2134s0020.1.p 168 FRKELTPSDVGKLNRLVVPKKYAIKYfphvsessredeAAGKLDDVMLAFFDKSMKLWKFRYCYWKSSQSYVFTRGWNRFVKENKLK 254
                             89*************************999988876662233478899999************************************ PP

                             TT-EEEEE CS
                      B3  76 egDfvvFk 83 
                             ++D++vF 
  SapurV1A.2134s0020.1.p 255 ANDTIVFC 262
                             *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-1445101IPR016177DNA-binding domain
PfamPF008474.8E-54592IPR001471AP2/ERF domain
CDDcd000189.12E-2245103No hitNo description
Gene3DG3DSA:3.30.730.101.4E-1646101IPR001471AP2/ERF domain
SMARTSM003802.5E-1846107IPR001471AP2/ERF domain
PROSITE profilePS5103216.68746101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-32164291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-28167264IPR015300DNA-binding pseudobarrel domain
CDDcd100176.48E-25167261No hitNo description
PROSITE profilePS5086312.055168276IPR003340B3 DNA binding domain
SMARTSM010191.4E-18168273IPR003340B3 DNA binding domain
PfamPF023623.1E-23168262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEEETVSLVL NAETSAIEEL SDSNSSTHPF PPSKRARSGS NVSASKFKGV VPQPNGHWGC  60
QIYANHLRIW LGTFKSEKEA AMAYDSAATK LRSGDSRRNF PPTDMTVEEP NFQSYYSTEA  120
VLSMIKDGTY RSKFADFTRT CSQSVETELS LKLMKPQSGG GLTCKQLFRK ELTPSDVGKL  180
NRLVVPKKYA IKYFPHVSES SREDEAAGKL DDVMLAFFDK SMKLWKFRYC YWKSSQSYVF  240
TRGWNRFVKE NKLKANDTIV FCSCEGVETV DSADQTFQMI DVISSCENSS NMTAESSSQS  300
MASEAEVQLL LGRGIAPDST VRKNVEEDRM VRADEPAEDA VRTGFKLFGI QIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2816426610105DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2134s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458800.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024458801.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024458802.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024458803.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6885e-99RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3N7F9G40.0A0A3N7F9G4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20040.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-101RAV family protein