PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2154s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 230aa    MW: 25707.6 Da    PI: 9.2024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2154s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-182670147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg+++ eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.2154s0020.1.p 26 RGNFSDEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 70
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-71332IPR009057Homeodomain-like
SuperFamilySSF466891.09E-191377IPR009057Homeodomain-like
PROSITE profilePS5129428.5652175IPR017930Myb domain
SMARTSM007171.3E-172573IPR001005SANT/Myb domain
PfamPF002498.6E-172670IPR001005SANT/Myb domain
CDDcd001671.75E-132871No hitNo description
Gene3DG3DSA:1.10.10.604.8E-243372IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MFSVDSSAVK EGKGRWINYL RPDLKRGNFS DEEDELIINL HSLLGNKWSL IAARLPGRTD  60
NEIKNYWNTH IKRKLFSRGI DPQTHRPLNS TTTSSTTSTT TNSTKSKNSN MGTKRITNFK  120
LEEQNYSFVQ VQPELITMSN IIKKACDSNS DPAEDSNSSS GHKLNLELSI GLPCQPQPSS  180
INDLNDSKQA NQRHQEQVVT HQSFGTYNRG FKNSEACRSC NAVEKLVTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-18107543108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2154s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001250.11e-114PREDICTED: transcription repressor MYB6-like
RefseqXP_011015999.11e-114PREDICTED: transcription repressor MYB6-like
SwissprotP813932e-47MYB08_ANTMA; Myb-related protein 308
TrEMBLB9IP371e-112B9IP37_POPTR; Uncharacterized protein
STRINGPOPTR_0019s00750.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-46myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]