PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2191s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 231aa    MW: 26396.5 Da    PI: 6.1605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2191s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161259148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W +eEd++l+  v+ +G g+W++++++ g+ R++k+c++rw +yl
  SapurV1A.2191s0020.1.p 12 KGLWKPEEDLILKAHVETHGEGNWSAVSKRSGLMRCGKSCRLRWKNYL 59
                            678*******************************************97 PP
2Myb_DNA-binding50.83.7e-1665110148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg +++eE++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.2191s0020.1.p  65 RGGMSQEEEDMIIRMHKLLGNR-WALIAGRIP-GRTDNDVKNYWNTHL 110
                             6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23762IPR009057Homeodomain-like
PROSITE profilePS5129424.835763IPR017930Myb domain
SuperFamilySSF466891.33E-289106IPR009057Homeodomain-like
SMARTSM007171.7E-131161IPR001005SANT/Myb domain
PfamPF002491.0E-141259IPR001005SANT/Myb domain
CDDcd001671.00E-101559No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2263112IPR009057Homeodomain-like
SMARTSM007172.2E-1564112IPR001005SANT/Myb domain
PROSITE profilePS5129419.04864114IPR017930Myb domain
PfamPF002491.4E-1465110IPR001005SANT/Myb domain
CDDcd001673.88E-1168110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MESEGAKPEF KKGLWKPEED LILKAHVETH GEGNWSAVSK RSGLMRCGKS CRLRWKNYLR  60
PNIKRGGMSQ EEEDMIIRMH KLLGNRWALI AGRIPGRTDN DVKNYWNTHL NNRSPSRKRK  120
TIDSELDQND EEKQNKSKRL RSPSNSQPTC NAIAVGSAEE LEGKKPENEG GGGAVSDAWI  180
QRDAQSMNYY IESPMMLDNN ATTFVYEDEP FLDYWDSFVM FESLDFGGDW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-25810823122MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120SRKRKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2191s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308975.11e-130transcription factor WER
SwissprotQ9LTF73e-60MYB82_ARATH; Transcription factor MYB82
TrEMBLB9HA931e-129B9HA93_POPTR; Uncharacterized protein
STRINGPOPTR_0006s06530.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.17e-63myb domain protein 82